ABOUT THIS RECORDspecies: Arachis ipaensis
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Arachis ipaensis Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGGGATCAGGCAGAGCATGA miRNA* ATGCACTGCCTCTTCCCTGGTT mismatches: 4 bulges: 1 |
pre-miRNA
ATGTATTGATACTGGGATCAGGCAGAGCATGACTGGAGCTACCTATATACACATTTGTTCATTGAGTCACAGAAGGAAACACACACATATACATACACAC
TTAGATAAAGACATGATACATCATCTCATCTATTGTGTCTATTCTCATGCACTGCCTCTTCCCTGGTTCTCTCTT
dot-bracket secondary structure
.......((.(((((((..((((((.(((((.(((..(((........(((....)))......)))..)))..((((...............((.((((
.(((((...((.((((....)))).)))))))..)))).))))))))))).))))))..)))).)))..))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATGTATTGATACTGGGATCAGGCAGAGCATGACTGGAGCTACCTATATACACATTTGTTCATTGAGTCACAGAAGGAAACACACACATATACATACACAC
TTAGATAAAGACATGATACATCATCTCATCTATTGTGTCTATTCTCATGCACTGCCTCTTCCCTGGTTCTCTCTT
dot-bracket secondary structure
.......((.(((((((..((((((.(((((.(((..(((........(((....)))......)))..)))..((((...............((.((((
.(((((...((.((((....)))).)))))))..)))).))))))))))).))))))..)))).)))..))....
SIMILARITIES| miRBase ahy-MIR408: 0.000000009 PMRD ppt-miR408b: 0.000009 microPC miR408: 0.000009 | UniProt no hits RFAM MIR408: 0.00004 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
