ABOUT THIS RECORDspecies: Musa ABB Group
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Musa ABB Group Musa x paradisiaca Eumusa Musa Musaceae Zingiberales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGCATGCCA miRNA* GCGTGTGAGGAGCCAAGCATA mismatches: 2 bulges: 0 |
pre-miRNA
CAAGAAGAGGTGAAATGGACTGTGCCTGGCTCCCTGCATGCCACTCGTATCGACGCCAATCATACCCATGGATTGGCAACTGCGGCTGGCGTGTGAGGAGC
CAAGCATACCTCTCACTCTCTCTCTC
dot-bracket secondary structure
).(((((((((((...((..(((((.(((((((.(((((((((.(((((.....(((((((.........)))))))...))))).))))))))).)))))
)).)))))))..)))).)))).))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CAAGAAGAGGTGAAATGGACTGTGCCTGGCTCCCTGCATGCCACTCGTATCGACGCCAATCATACCCATGGATTGGCAACTGCGGCTGGCGTGTGAGGAGC
CAAGCATACCTCTCACTCTCTCTCTC
dot-bracket secondary structure
).(((((((((((...((..(((((.(((((((.(((((((((.(((((.....(((((((.........)))))))...))))).))))))))).)))))
)).)))))))..)))).)))).))).
SIMILARITIES| miRBase rco-MIR160b: 4.0E-7 PMRD ptc-miR160h: 6.0E-6 microPC miR160: 2.0E-6 | UniProt no hits RFAM 0mir-160: 7.0E-6 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
