ABOUT THIS RECORDspecies: Aristolochia fimbriata
miRNA family: miR160d
source: miRNEST
Taxonomy by NCBI:
Aristolochia fimbriata Aristolochia Aristolochiaceae Piperales magnoliids Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTGCGAGGAGCCAAGCATA miRNA* TGCCTGGCTCCCTGTATGCCA mismatches: 2 bulges: 0 |
pre-miRNA
AAAAGGGCTGTGCCTGGCTCCCTGTATGCCACACGTAGAGACCCATCTGTTTATGATCGGCTACTGCGGGTGGCGTGCGAGGAGCCAAGCATACCTCCTC
dot-bracket secondary structure
....(((.(((((.(((((((.((((((((((.(((((((.((.(((.......))).)))).))))).)))))))))).))))))).))))))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAAAGGGCTGTGCCTGGCTCCCTGTATGCCACACGTAGAGACCCATCTGTTTATGATCGGCTACTGCGGGTGGCGTGCGAGGAGCCAAGCATACCTCCTC
dot-bracket secondary structure
....(((.(((((.(((((((.((((((((((.(((((((.((.(((.......))).)))).))))).)))))))))).))))))).))))))))....
SIMILARITIES| miRBase vvi-MIR160c: 0.000000000000001 PMRD vvi-miR160c: 0.000000000000001 microPC miR160: 1e-40 | UniProt no hits RFAM mir-160: 0.00000000000009 | most similar mature miRNAs |
Identical with: miR160 from microPC (MNEST046232) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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