miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum



ABOUT THIS RECORD

ID: MNEST001626
species: Nicotiana tabacum
miRNA family: MIR1439
source: miRNEST

Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTTGGGACAGAGTGAGTACT

miRNA*
 TTTACTCCCTCTATCCAAAAATA

mismatches: 3
bulges: 2
View larger
pre-miRNA
 AAATACACTGTAAAAAAGTTTACTCCCTCTATCCAAAAATACATGAAATTTTTCGCTTCTCGAGATTCAACTATATGAAATTTGACCAACATTTTAACAA
GTATTTTTTAAACTATATTGATATTAGAGTAATAGCAAATTATATTACTTTTCTTATATTTTTTGAATATCTAAACTTTAATTAAAATATTGAATTAACT
TAGTCCAATTTAGCTTTAAAAATTAGTCAAAACTTTCGAAAAAGTAAAACGTAACAAGTATTTTGGGACAGAGTGAGTACTTTCTTTTCTTGTTCAA

dot-bracket secondary structure
....(((....((.(((((..((((.((((.(((.(((((((.((..((.(((.((((.((((((((((......)))).((((((.((..((((((..(
((.........((((..(((((...(((((((((........)))))))))((..((((((((((((.........)))))..))))))).)))))))..
))))........))))))))).)).))))))..))))))..)))).))).))..)).))))))).))).)))).))))))))).))....)))....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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