ABOUT THIS RECORDspecies: Avena barbata
miRNA family: MIRf129
source: miRNEST
Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGGCGGGATTCCTTCCTTG miRNA* AGGGTGGACTCCTTCTGGATG mismatches: 4 bulges: 0 |
pre-miRNA
GCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTCCAGCTGCTTGCCCGCGAAGATCAGCCGC
TGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA
dot-bracket secondary structure
...(((((.(((..(.(((..(((((.(((.((((.((((((...((((.((((..(((((((((.........)))))..))))..((...)).)))))
)))..)))))).)))).))).)))))..))))...))).)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTCCAGCTGCTTGCCCGCGAAGATCAGCCGC
TGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA
dot-bracket secondary structure
...(((((.(((..(.(((..(((((.(((.((((.((((((...((((.((((..(((((((((.........)))))..))))..((...)).)))))
)))..)))))).)))).))).)))))..))))...))).)))))..
SIMILARITIES| miRBase no hits PMRD ath-miRf10060-akr: 2e-24 microPC no hits | UniProt sp|P0CH32|UBQ4_ARATH: 2e-20 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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