miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST000168
species: Avena barbata
miRNA family: MIRf129
source: miRNEST

Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCGGCGGGATTCCTTCCTTG

miRNA*
AGGGTGGACTCCTTCTGGATG

mismatches: 4
bulges: 0

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pre-miRNA
GCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTCCAGCTGCTTGCCCGCGAAGATCAGCCGC
TGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA


dot-bracket secondary structure
...(((((.(((..(.(((..(((((.(((.((((.((((((...((((.((((..(((((((((.........)))))..))))..((...)).)))))
)))..)))))).)))).))).)))))..))))...))).)))))..



SIMILARITIES
miRBase no hits

PMRD ath-miRf10060-akr: 2e-24

microPC no hits
UniProt sp|P0CH32|UBQ4_ARATH: 2e-20

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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