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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST001681
species: Ocimum basilicum
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Ocimum basilicum Ocimum Ocimeae Nepetoideae Lamiaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AATGGGACGGAGGGAGTACAA

miRNA*
 TTACTCCCTCCGTCCCGCGAG

mismatches: 5
bulges: 0
View larger
pre-miRNA
 CCCACTTTATTTATTACTCCCTCCGTCCCGCGAGAATTGTCCCAAAACTTTTAGGCGCGGGTATCAAGGAAAAAGAAAATTAGTGGTGTGAGTGGGTGGA
GGAGTGAGGTTGATGAATTCTAACCACTAAATCCTTTCCATTTTTGGTAATGGGACTAATAAATGGGAAAGACCAAAAAGGAAAGTGGGACAATTTAAAT
GGGACGGAGGGAGTACAATTCTAGAAAA

dot-bracket secondary structure
..............((((((((((((((((...(((((((((((...(((((.(((((...(((((..((.........))..)))))...)))(((((.
(((((...........)))))..)))))...((.((((((((((((((......))))).))))))))).)))).))))).....)))))))))))...)
))))))))))))))).............


SIMILARITIES
miRBase osa-MIR812h: 0.00005

PMRD osa-miRf11216-akr: 0.00005

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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