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Species belonging to selected taxon:

Ocimum basilicum



ABOUT THIS RECORD

ID: MNEST001681
species: Ocimum basilicum
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Ocimum basilicum Ocimum Ocimeae Nepetoideae Lamiaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AATGGGACGGAGGGAGTACAA

miRNA*
TTACTCCCTCCGTCCCGCGAG

mismatches: 5
bulges: 0

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pre-miRNA
CCCACTTTATTTATTACTCCCTCCGTCCCGCGAGAATTGTCCCAAAACTTTTAGGCGCGGGTATCAAGGAAAAAGAAAATTAGTGGTGTGAGTGGGTGGA
GGAGTGAGGTTGATGAATTCTAACCACTAAATCCTTTCCATTTTTGGTAATGGGACTAATAAATGGGAAAGACCAAAAAGGAAAGTGGGACAATTTAAAT
GGGACGGAGGGAGTACAA
TTCTAGAAAA


dot-bracket secondary structure
..............((((((((((((((((...(((((((((((...(((((.(((((...(((((..((.........))..)))))...)))(((((.
(((((...........)))))..)))))...((.((((((((((((((......))))).))))))))).)))).))))).....)))))))))))...)
)))))))))))))))...
..........



SIMILARITIES
miRBase osa-MIR812h: 0.00005

PMRD osa-miRf11216-akr: 0.00005

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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