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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001709
species: Panicum virgatum
miRNA family: MIR1439
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATTTGGAACGGAGGGAGTACA

miRNA*
 TGCAACCTTCTGTTCAGAAAAC

mismatches: 5
bulges: 1
View larger
pre-miRNA
 ATACAATTTGGAACGGAGGGAGTACATCAGTATGTCGATGGTTGAGCTCAAATATATAAGTATCTGAGCTGCCCAGCTGTTGATCATTTACCATGCAACC
TTCTGTTCAGAAAACAT

dot-bracket secondary structure
......(((.((((((((((.(((.......(((((((((((((((((((.((((....)))).))))))...)))))))))).)))......)))..))
)))))))).))).....


SIMILARITIES
miRBase tae-MIR1137: 0.0004

PMRD tae-miR1137: 0.0004

microPC miR1439: 0.0004		UniProt no hits

RFAM MIR1122: 0.00003		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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