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Species belonging to selected taxon:

Panicum virgatum



ABOUT THIS RECORD

ID: MNEST001793
species: Panicum virgatum
miRNA family: MIR408
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCACTGCCTCTTCCCTGGCT

miRNA*
 ACAGGGATGAGGCAGAGCATG

mismatches: 3
bulges: 0
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pre-miRNA
 CTGGATTGGAGACAGGGATGAGGCAGAGCATGGGATGGGGCCATCAACAAAAAAAAAACCGTTTCTTCCACTGCGAAAGAAGAGGGAGAGGGAGTTTGTG
TGAGGTTCTTCATCAGGCACAAAAAAGATTGAGAGCTCCGCTGGTGTTGTTGCTCCCTCCCCTGCACTGCCTCTTCCCTGGCTCCCCCATC

dot-bracket secondary structure
.(((...((((.((((((.(((((((.(((.((((.(((((...(((((......((((..((((((((.((........)).))))))))..))))..(
((.(((((((.(((............))).))))))).)))...)))))..))))).)))).))).))))))).)))))).)))).)))..


SIMILARITIES
miRBase sof-MIR408c: 1e-17

PMRD sof-miR408c: 1e-17

microPC miR408: 0.0002		UniProt no hits

RFAM MIR408: 2e-16		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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