miRNEST 2.0, an integrative microRNA resource

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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor

ABOUT THIS RECORD

ID: MNEST001794
species: Panicum virgatum
miRNA family: MIR399
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGCCAAAGGAGATTTGCCCAG

miRNA*
GGGCCATTTCTCCTTGGGCAGA

mismatches: 4
bulges: 1

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pre-miRNA
TTGATGATTACTGGGCCATTTCTCCTTGGGCAGAGTGATCAAACCTCACATTGCTGGATCTGTTTTGCTCTGCCAAAGGAGATTTGCCCAGCGATCCACA

dot-bracket secondary structure
.....((((.((((((....(((((((.((((((((((.((..((.((...))..))...))..)))))))))).)))))))...)))))).))))....

UniProt no hits

RFAM mir-399: 2e-21

most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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