miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum



ABOUT THIS RECORD

ID: MNEST001794
species: Panicum virgatum
miRNA family: MIR399
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCAAAGGAGATTTGCCCAG

miRNA*
 GGGCCATTTCTCCTTGGGCAGA

mismatches: 4
bulges: 1
View larger
pre-miRNA
 TTGATGATTACTGGGCCATTTCTCCTTGGGCAGAGTGATCAAACCTCACATTGCTGGATCTGTTTTGCTCTGCCAAAGGAGATTTGCCCAGCGATCCACA


dot-bracket secondary structure
.....((((.((((((....(((((((.((((((((((.((..((.((...))..))...))..)))))))))).)))))))...)))))).))))....



SIMILARITIES
miRBase sbi-MIR399f: 9e-23

PMRD sbi-miR399f: 9e-23

microPC miR399: 0.000005		UniProt no hits

RFAM mir-399: 2e-21		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;