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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST001805
species: Oryza sativa
miRNA family: MIRf10
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTCAAAAGATTCGTCTCGCAA

miRNA*
 GCGAGACGAGTTCATTAAGCC

mismatches: 4
bulges: 0
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pre-miRNA
 ACCAAATAAATTATAGATTCTACCTGTAAACTGCGAGACGAGTTCATTAAGCCTAATTAATTCGTCATTAGCAAATGTTTACTGTAGCACCACATTGTCA
AATCACGGCGCNATTAGGCTCAAAAGATTCGTCTCGCAATTTACATGCAAACTGTACNNCTGATTTTT

dot-bracket secondary structure
...........(((((.((.((..((((((.(((((((((((((..((.((((((((....((((.(((....(((((.............)))))....
))).))))....)))))))).))..))))))))))))).)))))))).)).)))))............


SIMILARITIES
miRBase osa-MIR442: 2e-46

PMRD osa-miR442: 2e-46

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record




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