ABOUT THIS RECORDspecies: Papaver somniferum
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Papaver somniferum Papaver Papaveraceae Ranunculales stem eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCATCATCA miRNA* ATGAATGATGCTGCTGCTGCTG mismatches: 5 bulges: 1 |
pre-miRNA
AGCTTTGGGAATTCTTTGTGGATGAGGGATGTAACGTTGCTGATGGTGATATTGTTCAACTTCATCATCATCATCATCATCATGTGAATACGATGAATGA
TGCTGCTGCTGCTGGTGATGTTTTGCCGGTTCAGTCACGTCACATACCCTACCATGCTTCTTTTGTTCCTTG
dot-bracket secondary structure
......((((((....(((((...((((((((.((((.(((((.(((((.((...(((.((.((.((.((.((((((((((..........)))).))))
)).)).)).))..))))).)).)))))...))))).)))).)))).)))).)))))........))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGCTTTGGGAATTCTTTGTGGATGAGGGATGTAACGTTGCTGATGGTGATATTGTTCAACTTCATCATCATCATCATCATCATGTGAATACGATGAATGA
TGCTGCTGCTGCTGGTGATGTTTTGCCGGTTCAGTCACGTCACATACCCTACCATGCTTCTTTTGTTCCTTG
dot-bracket secondary structure
......((((((....(((((...((((((((.((((.(((((.(((((.((...(((.((.((.((.((.((((((((((..........)))).))))
)).)).)).))..))))).)).)))))...))))).)))).)))).)))).)))))........))))))..
SIMILARITIES| miRBase bdi-MIR156b: 0.0005 PMRD no hits microPC no hits | UniProt no hits RFAM mir-598: 0.0002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
