miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001877
species: Parthenium argentatum
miRNA family: miR319b
source: miRNEST

Taxonomy by NCBI:
Parthenium argentatum Parthenium Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAGCTTTCTTCGGTCCACTC

miRNA*
 TTGGACTGAAGGGAGCTCCCT

mismatches: 4
bulges: 0
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pre-miRNA
 ATAAGAGAAAGAGAGCTTTCTTCGGTCCACTCACGGGTTACGATAAGATATCAATTAGCTGCCGACTCATTCACCCAAATACTAGGCCAAAATCTGTTTA
TAGTGCTTAGTAAATGATTGAATGATGCGGGAGACAAATTGGATCTTAAGTGTCCTGTATTTGGACTGAAGGGAGCTCCCTTATATTTC

dot-bracket secondary structure
........(((.(((((((((((((((((...(((((.(((..((((((.((((((..((.(((..(((((((..((..((((((((......(((....
))).))))))))..))..)))))))..))).))...)))))))))))).))).)))))...))))))))))))))))).))).......


SIMILARITIES
miRBase vvi-MIR319c: 3e-24

PMRD vvi-miR319c: 3e-24

microPC miR319: 5e-23		UniProt no hits

RFAM MIR159: 6e-23		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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