ABOUT THIS RECORDspecies: Picea engelmannii x Picea glauca
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Picea engelmannii x Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGAATGACTTGCCCG miRNA* GGTAGGTTGTTCTTGGCAAAG mismatches: 2 bulges: 0 |
pre-miRNA
ATTCGTGTAGGCTCTTGCATGTAGAGGCCGAGAGTGTTACTCAGCCAAGAATGACTTGCCCGCATACTGTTGTGGATTATGGTTCCACATACACATTGCA
GTTTTGTGGGTAGGTTGTTCTTGGCAAAGCATCGCTCTCTTCCTTTCATGCCAGGCCCCGCATGAGG
dot-bracket secondary structure
.(((((((.((.(((.(((((.(((((..(((((((...((..(((((((((((((((((((((.(((((.(((...((((......))))..))).)))
))..)))))))))))))))))))))..))...)))))))..)))))))))).))).)).))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTCGTGTAGGCTCTTGCATGTAGAGGCCGAGAGTGTTACTCAGCCAAGAATGACTTGCCCGCATACTGTTGTGGATTATGGTTCCACATACACATTGCA
GTTTTGTGGGTAGGTTGTTCTTGGCAAAGCATCGCTCTCTTCCTTTCATGCCAGGCCCCGCATGAGG
dot-bracket secondary structure
.(((((((.((.(((.(((((.(((((..(((((((...((..(((((((((((((((((((((.(((((.(((...((((......))))..))).)))
))..)))))))))))))))))))))..))...)))))))..)))))))))).))).)).))))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC miR169: 3e-42 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST045769) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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