miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST001941
species: Picea glauca
miRNA family: MIR418
source: miRNEST

Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAATGGGATGATGAACTGACA

miRNA*
 TAATAATATCATCCTCATTCGT

mismatches: 5
bulges: 1
View larger
pre-miRNA
 ATCTCAATCCAGAATGGGATGATGAACTGACAGTTGGTGTTCCATCCCCTACTGCACAACTCAAAGTGGTGAATTCGAAATTGCATTGGATTGGATGGAC
AATTTAGAGGATATTTGAAACATTTTAGTTTCCTAGTTTATTTGATTTTGGGAATATCTTCCCAGATTATGTAAACAGTTTGATATTATCCACAGGGAGG
TTTTACCCTGTGGAAAGACTTATAAATACCTATTATTTTGTAATAATATCATCCTCATTCGTGGGAGAAC

dot-bracket secondary structure
.(((((.....(((((((((((((.....((((..(((..(((((((.(((.((((.((.(((......))).))......)))).)))...))))))).
.(((((.((((...(((((....)))))..)))).((((((.((((((.(((((....))))))))))).)))))).((((.......(((((((((...
.....))))))))).))))...)))))))).......)))).....)))))))).))))).)))))....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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