miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST001941
species: Picea glauca
miRNA family: MIR418
source: miRNEST

Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GAATGGGATGATGAACTGACA

miRNA*
TAATAATATCATCCTCATTCGT

mismatches: 5
bulges: 1

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pre-miRNA
ATCTCAATCCAGAATGGGATGATGAACTGACAGTTGGTGTTCCATCCCCTACTGCACAACTCAAAGTGGTGAATTCGAAATTGCATTGGATTGGATGGAC
AATTTAGAGGATATTTGAAACATTTTAGTTTCCTAGTTTATTTGATTTTGGGAATATCTTCCCAGATTATGTAAACAGTTTGATATTATCCACAGGGAGG
TTTTACCCTGTGGAAAGACTTATAAATACCTATTATTTTGTAATAATATCATCCTCATTCGTGGGAGAAC


dot-bracket secondary structure
.(((((.....(((((((((((((.....((((..(((..(((((((.(((.((((.((.(((......))).))......)))).)))...))))))).
.(((((.((((...(((((....)))))..)))).((((((.((((((.(((((....))))))))))).)))))).((((.......(((((((((...
.....))))))))).))))...)))))))).......)))).....)))))))).))))).)))))....



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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