ABOUT THIS RECORDspecies: Picea glauca
miRNA family: miR160c
source: miRNEST
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTTACAAGGAGCCAAGCATA miRNA* TGCCTGGCTCCCTGTATGCCA mismatches: 3 bulges: 0 |
pre-miRNA
TATATGCAAAGGTTGATGTGTGCCTGGCTCCCTGTATGCCACATACAAGGCCCAGTCATATGTTGATTGGCTTCATAGGTGGCTTACAAGGAGCCAAGCA
TACGTTTTCTTACCCTCTA
dot-bracket secondary structure
........((((..(((((((((.(((((((.((((.(((((.((..(((((.(((((.....))))))))))..)).))))).)))).))))))).)))
)))))).))))........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATATGCAAAGGTTGATGTGTGCCTGGCTCCCTGTATGCCACATACAAGGCCCAGTCATATGTTGATTGGCTTCATAGGTGGCTTACAAGGAGCCAAGCA
TACGTTTTCTTACCCTCTA
dot-bracket secondary structure
........((((..(((((((((.(((((((.((((.(((((.((..(((((.(((((.....))))))))))..)).))))).)))).))))))).)))
)))))).))))........
SIMILARITIES| miRBase pab-MIR160a: 2e-55 PMRD pga-miR160: 6e-40 microPC miR160: 6e-40 | UniProt no hits RFAM mir-160: 0.000002 | most similar mature miRNAs |
Identical with: pab-MIR160a from miRBase (MNEST039374) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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