miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST001973
species: Picea glauca
miRNA family: miR160c
source: miRNEST

Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GCTTACAAGGAGCCAAGCATA

miRNA*
TGCCTGGCTCCCTGTATGCCA

mismatches: 3
bulges: 0

View larger
pre-miRNA
TATATGCAAAGGTTGATGTGTGCCTGGCTCCCTGTATGCCACATACAAGGCCCAGTCATATGTTGATTGGCTTCATAGGTGGCTTACAAGGAGCCAAGCA
TA
CGTTTTCTTACCCTCTA


dot-bracket secondary structure
........((((..(((((((((.(((((((.((((.(((((.((..(((((.(((((.....))))))))))..)).))))).)))).))))))).)))
))
)))).))))........



SIMILARITIES
miRBase pab-MIR160a: 2e-55

PMRD pga-miR160: 6e-40

microPC miR160: 6e-40
UniProt no hits

RFAM mir-160: 0.000002
most similar mature miRNAs

Identical with: pab-MIR160a from miRBase (MNEST039374)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;