ABOUT THIS RECORDspecies: Picea glauca
miRNA family: miR3710
source: miRNEST
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGGAACCTGATGGGCCTCCA miRNA* GGGAACCTGACGGGCCTCCAA mismatches: 3 bulges: 2 |
pre-miRNA
GCTCCACTCTGCAGGCGCTCCCAGACTCCGTGGGGAACCTGACGGGCCTCCAAAGTCTCGACTTGCTCCGGTGCTCCACTCTGCAGGCACTCCCAGATTC
GGTGGGGAACCTGATGGGCCTCCAAAGTCTCTCCTTGAGCTACTGCTCCACTC
dot-bracket secondary structure
..........((((..((((..(((((...(((((..((((.((((.(((((.(((((.(((((((...((((...))))..)))))...))..))))).
..)))))..)))).)))).))))).)))))......))))..)))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GCTCCACTCTGCAGGCGCTCCCAGACTCCGTGGGGAACCTGACGGGCCTCCAAAGTCTCGACTTGCTCCGGTGCTCCACTCTGCAGGCACTCCCAGATTC
GGTGGGGAACCTGATGGGCCTCCAAAGTCTCTCCTTGAGCTACTGCTCCACTC
dot-bracket secondary structure
..........((((..((((..(((((...(((((..((((.((((.(((((.(((((.(((((((...((((...))))..)))))...))..))))).
..)))))..)))).)))).))))).)))))......))))..)))).......
SIMILARITIES| miRBase pab-MIR3710: 0.000000000000008 PMRD pta-miR1315: 0.0000000005 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
