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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST001986
species: Picea sitchensis
miRNA family: MIR1311
source: miRNEST

Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCAGAGTTTTGCCAGTTCCGCC

miRNA*
 CGCACTGGCATAACTCTGACC

mismatches: 2
bulges: 1
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pre-miRNA
 CGCCTCTGCTTATGGGCTTGGTAGGATTAGGCGCACTGGCATAACTCTGACCATAGTTTATGGTCAGAGTTTTGCCAGTTCCGCCCATTCCTATTGTGCC
TTTAAGTAATTTC

dot-bracket secondary structure
......((((((.((((.((((((((...((((.(((((((.(((((((((((((...))))))))))))).)))))))..))))...)))))))).)))
).)))))).....


SIMILARITIES
miRBase pab-MIR1311: 9e-45

PMRD pta-miR1311: 0.000000000001

microPC miR1311: 1e-25		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR1311 from microPC (MNEST046092)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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