miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST001986
species: Picea sitchensis
miRNA family: MIR1311
source: miRNEST

Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCAGAGTTTTGCCAGTTCCGCC

miRNA*
CGCACTGGCATAACTCTGACC

mismatches: 2
bulges: 1

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pre-miRNA
CGCCTCTGCTTATGGGCTTGGTAGGATTAGGCGCACTGGCATAACTCTGACCATAGTTTATGGTCAGAGTTTTGCCAGTTCCGCCCATTCCTATTGTGCC
TTTAAGTAATTTC


dot-bracket secondary structure
......((((((.((((.((((((((...((((.(((((((.(((((((((((((...))))))))))))).)))))))..))))...)))))))).)))
).)))))).....



SIMILARITIES
miRBase pab-MIR1311: 9e-45

PMRD pta-miR1311: 0.000000000001

microPC miR1311: 1e-25
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: miR1311 from microPC (MNEST046092)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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