miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002001
species: Picea sitchensis
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGCCAAGGATGATTTGCCGAC

miRNA*
 TGGCGATTTGTCCTTGGCTAC

mismatches: 1
bulges: 0
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pre-miRNA
 AAATCATGTGGGATCTTGCATGAAAGGCCACAGTAGGTGATGGAGCCAAGGATGATTTGCCGACATCCACTCATAATCTGTCTGGACAAATGCATATTGT
ACATGACGTCATGATATGGAAGGAAGTTGGCGATTTGTCCTTGGCTACATATCTTGCTGTGCTTCTCATGCTAGACCTTAGATGAAAT

dot-bracket secondary structure
...((((.((((.(((.((((((.((((.((((((((..(((.((((((((((((.((((((((.(((..(((((.((.(((((.((((.......))))
.)).))).....)))))))..))).)))))))).)))))))))))).)))..)))))))))))).)))))).))).)))).))))...


SIMILARITIES
miRBase gma-MIR169c: 0.0006

PMRD ptr-miR169b: 0.0001

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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