miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002001
species: Picea sitchensis
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGCCAAGGATGATTTGCCGAC

miRNA*
TGGCGATTTGTCCTTGGCTAC

mismatches: 1
bulges: 0

View larger
pre-miRNA
AAATCATGTGGGATCTTGCATGAAAGGCCACAGTAGGTGATGGAGCCAAGGATGATTTGCCGACATCCACTCATAATCTGTCTGGACAAATGCATATTGT
ACATGACGTCATGATATGGAAGGAAGTTGGCGATTTGTCCTTGGCTACATATCTTGCTGTGCTTCTCATGCTAGACCTTAGATGAAAT


dot-bracket secondary structure
...((((.((((.(((.((((((.((((.((((((((..(((.((((((((((((.((((((((.(((..(((((.((.(((((.((((.......))))
.)).))).....)))))))..))).)))))))).)))))))))))).)))..)))))))))))).)))))).))).)))).))))...



SIMILARITIES
miRBase gma-MIR169c: 0.0006

PMRD ptr-miR169b: 0.0001

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;