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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002003
species: Picea sitchensis
miRNA family: MIR159
source: miRNEST

Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATTGGATTGAAGGGAGCTCCT

miRNA*
 GCGCTTCCTTCAACCCAATAA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 AAAGAAGCAAGAGCTGACGGGGCGCTTCCTTCAACCCAATAAATGGCTGTGTAGGGATGATTCAACTGCTGGTTCATGGATTCTATTACATTGTCACGTT
GCTGGAGCTATTTTTCGTGGCAAGATAATGGTGTGCATGGCACAGGAGTTGGAATGCCACTATGCGGCGTTATATTGGATTGAAGGGAGCTCCTCGCAGG
CCTCGTGCTGGA

dot-bracket secondary structure
.....((((.(((((..(((((.(((((((((((.((((((....(((((((((((.((.(((((((.(((..(((((.((.((((((..((((((((..
((....)).......))))))))..)))))).)).)))))..))).))))))).)))).)))))))))....)))))).))))))))))).)))))..))
.))).))))...


SIMILARITIES
miRBase pta-MIR159b: 0.0000000007

PMRD pta-miR159b: 0.0000000007

microPC miR159: 0.0000000007		UniProt no hits

RFAM MIR159: 0.0008		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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