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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002018
species: Pinus banksiana
miRNA family: MIR157
source: miRNEST

Taxonomy by NCBI:
Pinus banksiana Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATGACAGAAGAGAGAGAGCAC

miRNA*
 GCTCCTTTTTGCGTCGTCA

mismatches: 4
bulges: 2
View larger
pre-miRNA
 GGCTGTTGTGATGACAGAAGAGAGAGAGCACGCCCAGGTGATGGCAGGTAAGGCAGGGCATATCTCCCCATAGGAAATTTCTCACCCAGTACACCTATCA
GACGTTTCTCTTCTTGGCTTCCGGAGTTGGCCAATGAATCTAATGAATTCTTCCGCCGCCGTTCATTGTGCCCCGCCAACCTCCTTCTGCAGCTCCTTTT
TGCGTCGTCAAATTCCG

dot-bracket secondary structure
((..(((.(((((((...((((((.((((.....((((....((.((((..(((.((((((((......)))((((((.(((.................)
)).)))))).(((((((((.........)))))).)))..((((((((............))))))))))))).))).)))))).))))..)))))))))
)..)))))))))).)).


SIMILARITIES
miRBase sbi-MIR156d: 0.000003

PMRD sbi-miR156d: 0.000003

microPC miR157: 0.0007		UniProt sp|Q7XT42|SPL7_ORYSJ: 0.000000004

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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