ABOUT THIS RECORDspecies: Pinus pinaster
miRNA family: MIRf1255
source: miRNEST
Taxonomy by NCBI:
Pinus pinaster Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGTATGTACTTTTCTAGATC miRNA* TTGAGAAGTTACGTTGTTCA mismatches: 4 bulges: 1 |
pre-miRNA
AATTCGGCACGAGGTATGTACTTTTCTAGATCAAATTCCTGCAATCATTATCAAATTTGTTCTCAATTCACTCTTCTATTTTGTTTAATTTGGAAGATAT
TAGAGAGCAGGAAGATTGAGAAGTTACGTTGTTCATGTATTTA
dot-bracket secondary structure
......(((.(((..(((((..(((((.((((...(((((((..................(((((((....(((((((..((....))..))))))).))
).))))))))))))))).))))).)))))..))).))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
AATTCGGCACGAGGTATGTACTTTTCTAGATCAAATTCCTGCAATCATTATCAAATTTGTTCTCAATTCACTCTTCTATTTTGTTTAATTTGGAAGATAT
TAGAGAGCAGGAAGATTGAGAAGTTACGTTGTTCATGTATTTA
dot-bracket secondary structure
......(((.(((..(((((..(((((.((((...(((((((..................(((((((....(((((((..((....))..))))))).))
).))))))))))))))).))))).)))))..))).))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
