miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Pinus banksiana, Pinus banksiana, Pinus contorta, Pinus contorta, Pinus pinaster, Pinus pinaster, Pinus taeda, Pinus taeda



ABOUT THIS RECORD

ID: MNEST002036
species: Pinus taeda
miRNA family: MIR1311
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCAGAGTTTTGCCAGTTCCGCC

miRNA*
 CGGGCTGGCATAACTCCGCCC

mismatches: 4
bulges: 1
View larger
pre-miRNA
 CGCCTCTGCTTATTGGCTTGGTAGGAACAGGCGGGCTGGCATAACTCCGCCCATATTTTACTGTCAGAGATGGTCAGAGTTTTGCCAGTTCCGCCCATTC
CTACTGTGCTTTTTAAGTAATTT

dot-bracket secondary structure
......((((((..(((.(((((((((..((((((((((((.(((((...((((.(((.......))).))))...))))).)))))).))))))..)))
)))))).)))...))))))....


SIMILARITIES
miRBase pta-MIR1311: 2e-43

PMRD pta-miR1311: 2e-43

microPC miR1311: 1e-31		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: pta-MIR1311 from miRBase (MNEST039446)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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