miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Pinus banksiana, Pinus banksiana, Pinus contorta, Pinus contorta, Pinus pinaster, Pinus pinaster, Pinus taeda, Pinus taeda



ABOUT THIS RECORD

ID: MNEST002036
species: Pinus taeda
miRNA family: MIR1311
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCAGAGTTTTGCCAGTTCCGCC

miRNA*
CGGGCTGGCATAACTCCGCCC

mismatches: 4
bulges: 1

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pre-miRNA
CGCCTCTGCTTATTGGCTTGGTAGGAACAGGCGGGCTGGCATAACTCCGCCCATATTTTACTGTCAGAGATGGTCAGAGTTTTGCCAGTTCCGCCCATTC
CTACTGTGCTTTTTAAGTAATTT


dot-bracket secondary structure
......((((((..(((.(((((((((..((((((((((((.(((((...((((.(((.......))).))))...))))).)))))).))))))..)))
)))))).)))...))))))....



SIMILARITIES
miRBase pta-MIR1311: 2e-43

PMRD pta-miR1311: 2e-43

microPC miR1311: 1e-31
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: pta-MIR1311 from miRBase (MNEST039446)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





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