ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR1311
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGAGTTTTGCCAGTTCCGCC miRNA* CGGGCTGGCATAACTCCGCCC mismatches: 4 bulges: 1 |
pre-miRNA
CGCCTCTGCTTATTGGCTTGGTAGGAACAGGCGGGCTGGCATAACTCCGCCCATATTTTACTGTCAGAGATGGTCAGAGTTTTGCCAGTTCCGCCCATTC
CTACTGTGCTTTTTAAGTAATTT
dot-bracket secondary structure
......((((((..(((.(((((((((..((((((((((((.(((((...((((.(((.......))).))))...))))).)))))).))))))..)))
)))))).)))...))))))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGCCTCTGCTTATTGGCTTGGTAGGAACAGGCGGGCTGGCATAACTCCGCCCATATTTTACTGTCAGAGATGGTCAGAGTTTTGCCAGTTCCGCCCATTC
CTACTGTGCTTTTTAAGTAATTT
dot-bracket secondary structure
......((((((..(((.(((((((((..((((((((((((.(((((...((((.(((.......))).))))...))))).)))))).))))))..)))
)))))).)))...))))))....
SIMILARITIES| miRBase pta-MIR1311: 2e-43 PMRD pta-miR1311: 2e-43 microPC miR1311: 1e-31 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: pta-MIR1311 from miRBase (MNEST039446) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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