ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR951
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTTCTTGACGTCTGGACCAC miRNA* GGTTCAGTCATCAAGAACACC mismatches: 4 bulges: 0 |
pre-miRNA
AAGAGGAAGAGGAAGCGATGGTGTTCTTGACGTCTGGACCACGAGGGTTTGCGTTACGTTGGGCATGAATAAACAATCATCTACCGCGGTTCAGTCATCA
AGAACACCTTTGCTTTCATTTACATG
dot-bracket secondary structure
..........((((((((.(((((((((((...(((((((.(((((..(((..(((..(((....))).))).)))...)))..)).)))))))...)))
)))))))).)))))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGAGGAAGAGGAAGCGATGGTGTTCTTGACGTCTGGACCACGAGGGTTTGCGTTACGTTGGGCATGAATAAACAATCATCTACCGCGGTTCAGTCATCA
AGAACACCTTTGCTTTCATTTACATG
dot-bracket secondary structure
..........((((((((.(((((((((((...(((((((.(((((..(((..(((..(((....))).))).)))...)))..)).)))))))...)))
)))))))).)))))))).........
SIMILARITIES| miRBase pta-MIR951: 4e-50 PMRD pta-miR951: 4e-50 microPC miR951: 4e-38 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
