miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002044
species: Pinus taeda
miRNA family: MIR949
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTCCGGGAATCCAATGCGCC

miRNA*
 TGTATTGATTTCCGGGGAAG

mismatches: 0
bulges: 1
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pre-miRNA
 GAAGGAGAGCCTCTCCGGGAATCCAATGCGCCTTCCTCTTGAACGCCTTTCAACGCGCGTGCTGTGCGTGAAAACGCGTTTAGGAGGAAGGTGTATTGAT
TTCCGGGGAAGCCCTGGTT

dot-bracket secondary structure
..(((...((.((((((((((((.((((((((((((((((((((((.(((..((((((.....))))))..))).)))))))))))))))))))))))))
))))))))).)))))....


SIMILARITIES
miRBase pta-MIR949: 7e-58

PMRD pta-miR949: 7e-58

microPC miR949: 1e-50		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR949 from microPC (MNEST045449)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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Liczniki na strone;