miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002052
species: Pinus taeda
miRNA family: MIR1314
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGCCTCGAATGTTAGGAGA

miRNA*
 TTCAACATTAGAGGCCAATA

mismatches: 2
bulges: 1
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pre-miRNA
 GCCCATTCCAAACGATAACATGTTAGTTAGCTGAAGAGATTCTTCAACATTAGAGGCCAATATAGAATCATATTCTTATTCTTAATCGGCCTCGAATGTT
AGGAGAATGTTTTCCTCTACCTAAGCATGCTATCTCAATGGAATT

dot-bracket secondary structure
....((((((...((((.((((((((.(((..(((((.(((((((((((((.((((((.((..(((((.........)))))..)).)))))).))))))
.))))))).)))))..))).)))).)))).))))....)))))).


SIMILARITIES
miRBase pta-MIR1314: 4e-60

PMRD pta-miR1314: 4e-60

microPC miR1314: 1e-32		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR1314 from microPC (MNEST045564)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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