ABOUT THIS RECORDspecies: Barnadesia spinosa
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Barnadesia spinosa Barnadesia Barnadesioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTAGCCAAGGATGACTTGCCA miRNA* GCAAGCATCCTTGCCTACTA mismatches: 2 bulges: 1 |
pre-miRNA
TCTAGCAAAATGGAAGAAAGGTCTAAGACGAAGAAAGGAGTCTTTTTTGTGTAGCCAAGGATGACTTGCCACACGGCTAAGAGCCATTGAATTGGCCAAG
CTAGCGGCAAGCATCCTTGCCTACTACATGACAAGCTTTTTTCTCGCATCGTAGATCTTTACTTCTCTATCTT
dot-bracket secondary structure
...........((((((((((((((.(((((.((((((((.(((((.(((((((.((((((((.((((((....((((....((((......))))..))
))...)))))))))))))).)))).))).)).))))))))))))))..)).))))))))).))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCTAGCAAAATGGAAGAAAGGTCTAAGACGAAGAAAGGAGTCTTTTTTGTGTAGCCAAGGATGACTTGCCACACGGCTAAGAGCCATTGAATTGGCCAAG
CTAGCGGCAAGCATCCTTGCCTACTACATGACAAGCTTTTTTCTCGCATCGTAGATCTTTACTTCTCTATCTT
dot-bracket secondary structure
...........((((((((((((((.(((((.((((((((.(((((.(((((((.((((((((.((((((....((((....((((......))))..))
))...)))))))))))))).)))).))).)).))))))))))))))..)).))))))))).))))).......
SIMILARITIES| miRBase osa-MIR169e: 0.000002 PMRD osa-miR169e: 0.000002 microPC no hits | UniProt no hits RFAM MIR169_2: 0.00004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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