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Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000208
species: Barnadesia spinosa
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Barnadesia spinosa Barnadesia Barnadesioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTAGCCAAGGATGACTTGCCA

miRNA*
GCAAGCATCCTTGCCTACTA

mismatches: 2
bulges: 1

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pre-miRNA
TCTAGCAAAATGGAAGAAAGGTCTAAGACGAAGAAAGGAGTCTTTTTTGTGTAGCCAAGGATGACTTGCCACACGGCTAAGAGCCATTGAATTGGCCAAG
CTAGCGGCAAGCATCCTTGCCTACTACATGACAAGCTTTTTTCTCGCATCGTAGATCTTTACTTCTCTATCTT


dot-bracket secondary structure
...........((((((((((((((.(((((.((((((((.(((((.(((((((.((((((((.((((((....((((....((((......))))..))
))...)))))))))))))).)))).))).)).))))))))))))))..)).))))))))).))))).......



SIMILARITIES
miRBase osa-MIR169e: 0.000002

PMRD osa-miR169e: 0.000002

microPC no hits
UniProt no hits

RFAM MIR169_2: 0.00004
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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