ABOUT THIS RECORDspecies: Barnadesia spinosa
miRNA family: MIR477
source: miRNEST
Taxonomy by NCBI:
Barnadesia spinosa Barnadesia Barnadesioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCTCCCTCAAGGGCTTCTA miRNA* GAGGCCTGCTAAGGGAGAACA mismatches: 4 bulges: 1 |
pre-miRNA
TGTCCAAAGCATCGATTGCTTGCTCTCCCTCAAGGGCTTCTAACGTTTTTGTCATGTGGTGCTCTTAATTATAAGAGTTTGTTATGAGCAATGTTAGAGG
CCTGCTAAGGGAGAACAGATAGTCGGTGTTTTGAGA
dot-bracket secondary structure
..((((((((((((((((.(((.(((((((...((((((((((((((.(..(((((....(((((((....)))))))....)))))).)))))))))))
)))....))))))).))).)))))))))))))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTCCAAAGCATCGATTGCTTGCTCTCCCTCAAGGGCTTCTAACGTTTTTGTCATGTGGTGCTCTTAATTATAAGAGTTTGTTATGAGCAATGTTAGAGG
CCTGCTAAGGGAGAACAGATAGTCGGTGTTTTGAGA
dot-bracket secondary structure
..((((((((((((((((.(((.(((((((...((((((((((((((.(..(((((....(((((((....)))))))....)))))).)))))))))))
)))....))))))).))).)))))))))))))).))
SIMILARITIES| miRBase aqc-MIR477b: 0.00003 PMRD aqc-miR477b: 0.00003 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
