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Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST002124
species: Populus nigra
miRNA family: miR162
source: miRNEST

Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 NGGAGGCAGCGGTTCATCGAT

miRNA*
 CGATAAACCTCTGCATCCAGC

mismatches: 4
bulges: 0
View larger
pre-miRNA
 GTGGTGGGTTGGGAAGACACTNGGAGGCAGCGGTTCATCGATCTCTTCCTGGCCAATTTTTTGTTTAGCACGAAAAACATGAACCGATCGATAAACCTCT
GCATCCAGCGCTTCCTTTATTCCCCTT

dot-bracket secondary structure
..((.(((..((((((...(..(((.((((.((((.(((((((..(((.((.....((((((((.....)))))))))).)))..))))))).)))).))
)).))).)..))))))....)))))..


SIMILARITIES
miRBase ptc-MIR162a: 7e-52

PMRD ptc-miR162a: 7e-52

microPC miR162: 2e-43		UniProt no hits

RFAM MIR162_2: 7e-43		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
download this record




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