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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST002124
species: Populus nigra
miRNA family: miR162
source: miRNEST

Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
NGGAGGCAGCGGTTCATCGAT

miRNA*
CGATAAACCTCTGCATCCAGC

mismatches: 4
bulges: 0

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pre-miRNA
GTGGTGGGTTGGGAAGACACTNGGAGGCAGCGGTTCATCGATCTCTTCCTGGCCAATTTTTTGTTTAGCACGAAAAACATGAACCGATCGATAAACCTCT
GCATCCAGC
GCTTCCTTTATTCCCCTT


dot-bracket secondary structure
..((.(((..((((((...(..(((.((((.((((.(((((((..(((.((.....((((((((.....)))))))))).)))..))))))).)))).))
)).))).).
.))))))....)))))..



SIMILARITIES
miRBase ptc-MIR162a: 7e-52

PMRD ptc-miR162a: 7e-52

microPC miR162: 2e-43
UniProt no hits

RFAM MIR162_2: 7e-43
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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