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Species belonging to selected taxon:

Populus tremula



ABOUT THIS RECORD

ID: MNEST002157
species: Populus tremula
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGCTTGGTGCAGGTCGGGAA

miRNA*
 CCCGCCTTGCATCAACTGAAT

mismatches: 3
bulges: 0
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pre-miRNA
 GGAAAGAGGGATTTTAGTTACCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTCTGCGATTTCATTGCCAGATGGCTAAACACGATTGGCT
GTGAGGCAAATTATAAAAAGAAAGAGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGGTGAAGACTCCGCCGCCGCCG

dot-bracket secondary structure
((.....(((.(((...((((((.((((((((.(((((.((((((((((.(((((.((((((((....((((.(((((..((((((((......))))))
))..))))).((.....)))))).)))))))).))))).)))))))))).))))).))))))))))))))))).)))....))....


SIMILARITIES
miRBase ptc-MIR168b: 2e-68

PMRD ptc-miR168b: 2e-68

microPC miR168: 2e-62		UniProt no hits

RFAM MIR168: 2e-78		most similar mature miRNAs

Identical with: miR168 from microPC (MNEST045088)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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