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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST002226
species: Populus trichocarpa x Populus nigra
miRNA family: MIRf445
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCGATGCAGCATCATCAAGAT

miRNA*
 CTTGATGATGCTCCACCCGCA

mismatches: 4
bulges: 0
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pre-miRNA
 TCCTTTTGTGTTGTATAGTCGTTTATTGCCGATGCAGCATCATCAAGATTCTCACTTCCAAAGAACTTTGGCAGATGAACAGAAACAAAGAGAGATTTAA
CTCTAACATCTCCGGCCGTGCATTTGCATGTGAATCTTGATGATGCTCCACCCGCAAACAACGATTGTCAATATTTCCATG

dot-bracket secondary structure
.......((((((.(((((((((..((((...((.(((((((((((((((((((((.(((((....))))).)).)))..(((.......((((......
))))....))).....(((((....))))).)))))))))))))))).))...))))..))))))))))))))).......


SIMILARITIES
miRBase ptc-MIR172b: 5e-66

PMRD ptc-miRf10081-akr: 3e-70

microPC miR172: 0.000002		UniProt no hits

RFAM mir-172: 2e-65		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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