miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST002228
species: Populus trichocarpa x Populus nigra
miRNA family: MIR838
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTTCTTCTACTTCTTCCATT

miRNA*
 GGAGAGGGAGAGGGAGAGA

mismatches: 1
bulges: 2
View larger
pre-miRNA
 CAGCCTCAAGCTTTTCTTCTACTTCTTCCATTTCTTTTTTCTGTGATGATTTTGAATCCGATCTCCAGGCAATGTAAAGTAGCCGCAGGCCAAAAAATGC
ATAAAGAACGGTGGCTGCACTATTTGTATGCTTCCTTGAAATTAAATTTGGCACGATTCTACCAAGTCCAGTAGAAAGTACCTAAATGACATGCACAACA
GCTTTAAGCTTCACCAACATTGAGAATAAGAAAAGTTCAGTGTAGTTGCTGGCTGGACCATTCCATTCAATGCCTTGCAGTGTCAGAAGAAAGAAAGGAG
AGGGAGAGGGAGAGAGAGAACAA

dot-bracket secondary structure
....(((...((((((((((.(((((((..(((((((((((((...((...((((((..((..(((.(((.((.....)).)))(((.((((((....((
(((..(((.((((....)))).))).)))))...............))))))....((((((........)))))).((.........)).))).....(
(((...(((...((..((((((((...........)))))))).)).))))))))))....)).)))))).......))....)))))))))))))))))
))).)))))))))).))).....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q6ZIB9|GDT14_ORYSJ: 6e-16

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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