ABOUT THIS RECORDspecies: Prunus persica
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Prunus persica Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTCTTCCTCTTCTTCTTCTT miRNA* GAGAGTTTGGGAGGAGGTT mismatches: 4 bulges: 2 |
pre-miRNA
CATATTCCCAAGCTCTTCCTCTTCTTCTTCTTCCTTTGCCATGTCAACTGAATCTTCTGGAAAAGTGAAAGTAGAAGGGGAGTGCATTCATTTCGGTGGA
GAAATCGAGTAGGGGTGCATTTCTGTAAATACTTGGGATTCTTTGGGCTAACATTTTCGGTTTAGGTGGTGAAAGAAGAGAGTTTGGGAGGAGGTTAGGA
TTAA
dot-bracket secondary structure
..((.(((.((.((((((((...(((..(((((.((((((((...(((((((.....(((.((((...(((((....((((((((((((..((((((...
...))))))...)))))))))))).....)))))......))))...))).....)))))))...)))))))).))))))))...)))))))).)).)))
.)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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CATATTCCCAAGCTCTTCCTCTTCTTCTTCTTCCTTTGCCATGTCAACTGAATCTTCTGGAAAAGTGAAAGTAGAAGGGGAGTGCATTCATTTCGGTGGA
GAAATCGAGTAGGGGTGCATTTCTGTAAATACTTGGGATTCTTTGGGCTAACATTTTCGGTTTAGGTGGTGAAAGAAGAGAGTTTGGGAGGAGGTTAGGA
TTAA
dot-bracket secondary structure
..((.(((.((.((((((((...(((..(((((.((((((((...(((((((.....(((.((((...(((((....((((((((((((..((((((...
...))))))...)))))))))))).....)))))......))))...))).....)))))))...)))))))).))))))))...)))))))).)).)))
.)).
SIMILARITIES| miRBase aly-MIR159b: 0.0006 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
