ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR400
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGAGAGTATTATAAGTCAC miRNA* GACTTATAAAGATCTCATGAT mismatches: 3 bulges: 0 |
pre-miRNA
AGAAGTTGCTGAAGATTGTTTTATGAGAGTATTATAAGTCACCGCATTTGGTAATCAAGTGTTGCTTTCCCAAACGAAGTGACTTATAAAGATCTCATGA
TTAATCGATTTTTTGCAAG
dot-bracket secondary structure
.....((((.((((((((..((((((((...(((((((((((....(((((.((.(((...)))..)).)))))....)))))))))))...))))))))
.....)))))))).)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AGAAGTTGCTGAAGATTGTTTTATGAGAGTATTATAAGTCACCGCATTTGGTAATCAAGTGTTGCTTTCCCAAACGAAGTGACTTATAAAGATCTCATGA
TTAATCGATTTTTTGCAAG
dot-bracket secondary structure
.....((((.((((((((..((((((((...(((((((((((....(((((.((.(((...)))..)).)))))....)))))))))))...))))))))
.....)))))))).)))).
SIMILARITIES| miRBase ath-MIR400: 0.000000000000007 PMRD ath-miR400: 0.000000000000007 microPC miR400: 9e-39 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR400 from microPC (MNEST046525) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
