miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000225
species: Brassica napus
miRNA family: MIR400
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TATGAGAGTATTATAAGTCAC

miRNA*
 GACTTATAAAGATCTCATGAT

mismatches: 3
bulges: 0
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pre-miRNA
 AGAAGTTGCTGAAGATTGTTTTATGAGAGTATTATAAGTCACCGCATTTGGTAATCAAGTGTTGCTTTCCCAAACGAAGTGACTTATAAAGATCTCATGA
TTAATCGATTTTTTGCAAG

dot-bracket secondary structure
.....((((.((((((((..((((((((...(((((((((((....(((((.((.(((...)))..)).)))))....)))))))))))...))))))))
.....)))))))).)))).


SIMILARITIES
miRBase ath-MIR400: 0.000000000000007

PMRD ath-miR400: 0.000000000000007

microPC miR400: 9e-39		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR400 from microPC (MNEST046525)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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