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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000225
species: Brassica napus
miRNA family: MIR400
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATGAGAGTATTATAAGTCAC

miRNA*
GACTTATAAAGATCTCATGAT

mismatches: 3
bulges: 0

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pre-miRNA
AGAAGTTGCTGAAGATTGTTTTATGAGAGTATTATAAGTCACCGCATTTGGTAATCAAGTGTTGCTTTCCCAAACGAAGTGACTTATAAAGATCTCATGA
T
TAATCGATTTTTTGCAAG


dot-bracket secondary structure
.....((((.((((((((..((((((((...(((((((((((....(((((.((.(((...)))..)).)))))....)))))))))))...))))))))
.
....)))))))).)))).



SIMILARITIES
miRBase ath-MIR400: 0.000000000000007

PMRD ath-miR400: 0.000000000000007

microPC miR400: 9e-39
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: miR400 from microPC (MNEST046525)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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