ABOUT THIS RECORDspecies: Quercus petraea
miRNA family: MIRf129
source: miRNEST
Taxonomy by NCBI:
Quercus petraea Quercus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGGTGGGATTCCTTCCTTG miRNA* AGGGGTCGACTCCTTCTGGATG mismatches: 3 bulges: 1 |
pre-miRNA
GAGGACAAGATGAGGGGTCGACTCCTTCTGGATGTTATAGTCGGCAAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCC
GGTGGGATTCCTTCCTTGTCTTGGATC
dot-bracket secondary structure
.....((((((((((((..((.((((.(((((........((((((.((((.((((...................)))).......)))).)))))))))
)).)))).)).))))))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GAGGACAAGATGAGGGGTCGACTCCTTCTGGATGTTATAGTCGGCAAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCGAAAATCAACCTCTGCTGGTCC
GGTGGGATTCCTTCCTTGTCTTGGATC
dot-bracket secondary structure
.....((((((((((((..((.((((.(((((........((((((.((((.((((...................)))).......)))).)))))))))
)).)))).)).))))))))))))....
SIMILARITIES| miRBase no hits PMRD ath-miRf10060-akr: 0.0000000000004 microPC no hits | UniProt sp|Q9FHQ6|UBQ9_ARATH: 2e-16 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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