ABOUT THIS RECORDspecies: Quercus petraea
miRNA family: MIR403
source: miRNEST
Taxonomy by NCBI:
Quercus petraea Quercus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATTCACGCACAAACTCT miRNA* AGTTTGTGCGTGAATCCGACC mismatches: 3 bulges: 0 |
pre-miRNA
AAGAGAGATGGGACCTATCTCAAGTTTGTGCGTGAATCCGACCCCATCACATTTGTTCATTTTTAATCATGCCATACCATCCGATGGTGTTAGATTCACG
CACAAACTCTTGATTTGTCTCCTCTGCAA
dot-bracket secondary structure
.....(((.(((((..(((...((((((((((((((((.(((.(((((..................................))))).))).))))))))
))))))))...)))..))))).)))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGAGAGATGGGACCTATCTCAAGTTTGTGCGTGAATCCGACCCCATCACATTTGTTCATTTTTAATCATGCCATACCATCCGATGGTGTTAGATTCACG
CACAAACTCTTGATTTGTCTCCTCTGCAA
dot-bracket secondary structure
.....(((.(((((..(((...((((((((((((((((.(((.(((((..................................))))).))).))))))))
))))))))...)))..))))).)))....
SIMILARITIES| miRBase tcc-MIR403b: 0.0000000000001 PMRD ptc-miR403b: 0.0000001 microPC miR403: 0.000006 | UniProt no hits RFAM MIR403: 0.000000008 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
