ABOUT THIS RECORDspecies: Quercus robur
miRNA family: MIR403
source: miRNEST
Taxonomy by NCBI:
Quercus robur Quercus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATTCACGCACAAACTCG miRNA* GGCTTGTGTGTGAATCTAATA mismatches: 3 bulges: 0 |
pre-miRNA
GCGCAAGAAGAGTCATATTTCAGGCTTGTGTGTGAATCTAATATCCACATCCAATGACAAAAGCACCAAAACCCTTCTTTCTCATTGGGTGCTGTTAGAT
TCACGCACAAACTCGTAATCTGTCTTTTCATATT
dot-bracket secondary structure
......((((((.((.(((...((.((((((((((((((((((....((((((((((.(((................))).)))))))))).))))))))
)))))))))).))...))).)).)))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCGCAAGAAGAGTCATATTTCAGGCTTGTGTGTGAATCTAATATCCACATCCAATGACAAAAGCACCAAAACCCTTCTTTCTCATTGGGTGCTGTTAGAT
TCACGCACAAACTCGTAATCTGTCTTTTCATATT
dot-bracket secondary structure
......((((((.((.(((...((.((((((((((((((((((....((((((((((.(((................))).)))))))))).))))))))
)))))))))).))...))).)).)))))).....
SIMILARITIES| miRBase tcc-MIR403a: 0.000000000000002 PMRD bst-miR403: 0.0000000000005 microPC miR403: 0.000007 | UniProt no hits RFAM MIR403: 0.000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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