ABOUT THIS RECORDspecies: Raphanus raphanistrum
miRNA family: MIR2936
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGAGAGAGATAACACAGAC miRNA* CTGTTCTATCTCTCTCTTCCA mismatches: 5 bulges: 0 |
pre-miRNA
AATCAATCTAGTTTGAGAGAGATAACACAGACGAAACCAAGCTTCTTCCATCTCGTTGCCGCAGATCAAACTTTCCTATTCCTCGGATAAACCTCTCCTT
CTGCGGCGGCGAAACAGAGGAACAAACCTCACTAACAAAAAAAGTTTATACCTTTATATTGTCTGTTCTATCTCTCTCTTCCAAAAATGGC
dot-bracket secondary structure
..............((((((((((..((((((((....(((.((((((....(((((((((((((........(((........)))............)
))))))))))))....)))))).((((................))))....)))....))))))))..))))))))))..(((....))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AATCAATCTAGTTTGAGAGAGATAACACAGACGAAACCAAGCTTCTTCCATCTCGTTGCCGCAGATCAAACTTTCCTATTCCTCGGATAAACCTCTCCTT
CTGCGGCGGCGAAACAGAGGAACAAACCTCACTAACAAAAAAAGTTTATACCTTTATATTGTCTGTTCTATCTCTCTCTTCCAAAAATGGC
dot-bracket secondary structure
..............((((((((((..((((((((....(((.((((((....(((((((((((((........(((........)))............)
))))))))))))....)))))).((((................))))....)))....))))))))..))))))))))..(((....))).
SIMILARITIES| miRBase ath-MIR2936: 7e-16 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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